Development of SNP Arrays - in collaboration with our international partners:

Apple:

Chagné, D., Crowhurst, R.N., Troggio, M., Davey, M.W., Gilmore, B., Lawley, C., Vanderzande, S., Hellens, R.P., Kumar, S., Cestaro, A., Velasco, R., Main, D., Rees, J.D., Iezzoni, A., Mockler, T., Wilhelm, L., van de Weg, E., Gardiner, S.E., Bassil, N., and Peace, C. 2012. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PLoS ONE 7(2): e31745.

Peach:

Verde, I., Bassil, N., Scalabrin, S., Gilmore, B., Lawley, C., Gasic, K., Diego, M.,Rosyara, U., Cattonaro, F., Vendramin, E., Main, D., Aramini, V., Blas, A., Mockler, T., Bryant, D., Wilhelm, L., Troggio, M., Sosinski, B., Aranzana, M., Arús, P., Iezzoni, A., Morgante, M., and Peace,C. 2012. Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. PloS ONE7(4): e35668.

Cherry:

Peace, C., Bassil, N., Main, D., Ficklin, S., Rosyara, U.R., Stegmeir, T., Sebolt, A., Gilmore, B., Lawley, C., Mockler, T.C., Bryant, D.W., and Iezzoni, A. 2012. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PLoS ONE 7(12): e48305. doi:10.1371/journal.pone.0048305

Strawberry:

Bassil N, Davis T, Zhang H, Ficklin S, Mittmann M, Webster T, Mahoney L, Wood D, Alperin E, Rosyara U, Putten H, Monfort A, Sargent D, Amaya I, Denoyes B, Bianco L, van Dijk T, Pirani A, Iezzoni A, Main D, Peace C, Yang Y, Whitaker V, Verma S, Bellon L, Brew F, Herrera R, van de Weg E. 2015. Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa. BMC Genomics 16:155 doi:10.1186/s12864-015-1310-1.​